Protein ZmLBD8 | |
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Information | |
TF Name: | ZmLBD8 |
Species: | Maize |
TF Family: | LBD |
Gene Name(Synonym): | LBD8 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 1 |
ZmLBD8 is a protein in the LBD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | |
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PF03195 | |
Zm00001eb035850_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d031544 | DAPseq | sequence | fimo | position | |
Zm00001d031544 | DAPseq | sequence | fimo | position | |
Zm00001d031544 | ChIPseq | sequence | fimo | position | |
Zm00001d031544 | PChIPseq | sequence | fimo | position |
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF03195 |
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Hover here to show all domains |
ATGTCGGCGGCGGGCGGCGGCGGCG...
ATGTCGGCGGCGGGCGGCGGCGGCGGCGGCGGCAGTAATATGGAAATGGACCAGCATCCGGACAGCGGCGGCGGCAGTGCGGCTGCGAGCCGGCGGTGCGCCGCGTGCAAGTACCTCCGGCGGAGGTGCGCCCCCGGCTGCGTCCTGGCGCCCTACTTCCCGGCGTCGCAGCCGCGGAGGTACGCCGACGTGCACGCCGTCTTCGGCACCAGCAACGTCACCAGAGTGCTCCAGAGCCTGCCGGTGCAGGAGCGAGGCCGGGCGGCGGACACGATGGCGACGGAGGCGCACTGCCGGGTGCAGGACCCGGTGTACGGCTGCACGGGGATCATCCACCGCCTGCAGCAGGAGATCCGCGACGTGCAGCGCCAGCTCGCCACTACGCGGGCGCAGCTCGCCACTATGCACGTGCACGGCGGCACGGCGCCGCCGCCGCCGCCGCCTCTCGCTGCCGCTGGAGCTGGAGCTGCAGCTGCTACGGTGGCGGTGAGCAGCGGCGGACGGCGTCGCGTCAGCGTGCACGACGACGACGAGGAGGAGGCGCCGTTGACGGTGGACCCCGCCGAGTTCCTCGACCTCGATGCATGGCCGCCTCTGACGAGCGAACTCTGCCGGCCATAG
MEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSLPVQERGRAADTMA
TEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAATVAVSSGGRRRVSV
HDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
GGGCGGCGGCGGCGGCGGCGGCAGT...
GGGCGGCGGCGGCGGCGGCGGCAGTAATATGGAAATGGACCAGCATCCGGACAGCGGCGGCGGCAGTGCGGCTGCGAGCCGGCGGTGCGCCGCGTGCAAGTACCTCCGGCGGAGGTGCGCCCCCGGCTGCGTCCTGGCGCCCTACTTCCCGGCGTCGCAGCCGCGGAGGTACGCCGACGTGCACGCCGTCTTCGGCACCAGCAACGTCACCAGAGTGCTCCAGAGCCTGCCGGTGCAGGAGCGAGGCCGGGCGGCGGACACGATGGCGACGGAGGCGCACTGCCGGGTGCAGGACCCGGTGTACGGCTGCACGGGGATCATCCACCGCCTGCAGCAGGAGATCCGCGACGTGCAGCGCCAGCTCGCCACTACGCGGGCGCAGCTCGCCACTATGCACGTGCACGGCGGCACGGCGCCGCCGCCGCCGCCGCCTCTCGCTGCCGCTGGAGCTGGAGCTGCAGCTGCTACGGTGGCGGTGAGCAGCGGCGGACGGCGTCGCGTCAGCGTGCACGACGACGACGAGGAGGAGGCGCCGTTGACGGTGGACCCCGCCGAGTTCCTCGACCTCGATGCATGGCCGCCTCTGACGAGCGAACTCTGCCGGCCATAG
MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP
ATGTCGGCGGCGGGCGGCGGCGGCG...
ATGTCGGCGGCGGGCGGCGGCGGCGGCGGCGGCAGTAATATGGAAATGGACCAGCATCCGGACAGCGGCGGCGGCAGTGCGGCTGCGAGCCGGCGGTGCGCCGCGTGCAAGTACCTCCGGCGGAGGTGCGCCCCCGGCTGCGTCCTGGCGCCCTACTTCCCGGCGTCGCAGCCGCGGAGGTACGCCGACGTGCACGCCGTCTTCGGCACCAGCAACGTCACCAGAGTGCTCCAGAGCCTGCCGGTGCAGGAGCGAGGCCGGGCGGCGGACACGATGGCGACGGAGGCGCACTGCCGGGTGCAGGACCCGGTGTACGGCTGCACGGGGATCATCCACCGCCTGCAGCAGGAGATCCGCGACGTGCAGCGCCAGCTCGCCACTACGCGGGCGCAGCTCGCCACTATGCACGTGCACGGCGGCACGGCGCCGCCGCCGCCGCCGCCTCTCGCTGCCGCTGGAGCTGGAGCTGCAGCTGCTACGGTGGCGGTGAGCAGCGGCGGACGGCGTCGCGTCAGCGTGCACGACGACGACGAGGAGGAGGCGCCGTTGACGGTGGACCCCGCCGAGTTCCTCGACCTCGATGCATGGCCGCCTCTGACGAGCGAACTCTGCCGGCCATAG
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