Protein ZmLBD8
ZmLBD8 is a protein in the LBD family.
Information
TF Name: ZmLBD8
Species: Maize
TF Family: LBD
Gene Name(Synonym): LBD8
Uniprot ID: A0A1D6PDQ1
Subgenome: 1

Protein ZmLBD8

ZmLBD8 is a protein in the LBD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF03195
Zm00001eb035850_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d031544DAPseq no logo sequence fimo position
Zm00001d031544DAPseq no logo sequence fimo position
Zm00001d031544ChIPseq no logo sequence fimo position
Zm00001d031544PChIPseq no logo sequence fimo position

Interactions where ZmLBD8 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmLBD8 is the target  
Expand


There are 139 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb035850_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF03195
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard
     
Expand

ATGTCGGCGGCGGGCGGCGGCGGCG...

GRMZM2G132667_T01 from maize genome v3


Related TFome: pUT4104

Amino Acid Sequence
Copy to clipboard

MEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSLPVQERGRAADTMA
TEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAATVAVSSGGRRRVSV
HDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

Nucleotide Sequence
Copy to clipboard
     
Expand

GGGCGGCGGCGGCGGCGGCGGCAGT...

Zm00001d031544_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MSAAGGGGGGGSNMEMDQHPDSGGGSAAASRRCAACKYLRRRCAPGCVLAPYFPASQPRRYADVHAVFGTSNVTRVLQSL
PVQERGRAADTMATEAHCRVQDPVYGCTGIIHRLQQEIRDVQRQLATTRAQLATMHVHGGTAPPPPPPLAAAGAGAAAAT
VAVSSGGRRRVSVHDDDEEEAPLTVDPAEFLDLDAWPPLTSELCRP

Nucleotide Sequence
Copy to clipboard
     
Expand

ATGTCGGCGGCGGGCGGCGGCGGCG...


Copyright © 2023 Grassius.org | Last updated: 2023-06-26